Ljubinko Drulovic's side played a draw for the second time in this tournament as their opening match against Iraq was finished with a 3-3 draw.
Jasur Yakhshibaev gave a 1-0 lead to Uzbekistan after he brilliantly converted a goal from a penalty kick in the 40th minute.
However, Muhammad Isom Said put the sides in level term 8 minutes into the second period at the UAE FA Stadium.
Uzbekistan U23 1-1 Jordan U23
Goals: Jasur Yakhshibaev (40) - Muhammad Isom Said (53)